A collaborative paper by authors of the doc. Otyepka's (RCPTM) and prof. Koca's (Masaryk University) research teams was accepted for publication in the prestigious journal Nucleic Acids Research (IF2010 = 7.836). This paper deals with software Mole 2.0. This software is an universal toolkit for rapid and fully automated location and characterization of channels, tunnels and pores in (bio)macromolecular structures. More informations on Mole 2.0 homepage.