2008

• J. Hosek, L. Bartosova, P. Gregor, M. Kolorz, P. Dite, M. Batovsky, and M. Bartos, “Frequency of representative single nucleotide polymorphisms associated with inflammatory bowel disease in the Czech Republic and Slovak Republic,” Folia Biologica, vol. 54, iss. 3, pp. 88-96, 2008.
  
• T. Roessler, D. Mandat, J. Gallo, M. Hrabovsky, M. Pochmon, and V. Havranek, “Sensor of total hip arthroplasty wear designed on pronciple of scanning profilometry,” in 16TH POLISH-SLOVAK-CZECH OPTICAL CONFERENCE ON WAVE AND QUANTUM ASPECTS OF CONTEMPORARY OPTICS, 2008.
  
• P. Pavlicek, “Influence of surface roughness on the measurement uncertainty of white-light interferometry,” in 16TH POLISH-SLOVAK-CZECH OPTICAL CONFERENCE ON WAVE AND QUANTUM ASPECTS OF CONTEMPORARY OPTICS, 2008.
  
• J. Perina Jr., J. Perina, O. Haderka, J. Krepelka, M. Hamar, V. Michalek, M. Bondani, A. Allevi, and A. Andreoni, “Photocount measurements as a tool for investigation of non-classical properties of twin beams,” in 16TH POLISH-SLOVAK-CZECH OPTICAL CONFERENCE ON WAVE AND QUANTUM ASPECTS OF CONTEMPORARY OPTICS, 2008.
  
• M. C. Vesper, P. Baran, and Z. Travnicek, “INOR 793-Synthesis of 2-(o-thiophenyliminomethyl)pyridine N-oxide,” ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, vol. 235, 2008.
  
• K. M. George, P. Baran, Z. Travnicek, and L. Stajgerova, “INOR 794-Synthesis of guanine N-oxides and their complexes,” ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, vol. 235, 2008.
  
• J. D. Houck, A. Klanicova, Z. Travnicek, and P. Baran, “CHED 1156-Copper(II) complexes of 6-(benzylamino)purines with 1, 10-phenanthroline,” ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, vol. 235, 2008.
  
• Z. Dvorak, R. Vrzal, P. Henklova, P. Jancova, E. Anzenbacherova, P. Maurel, P. Pavek, P. Bednar, and J. Ulrichova, “JNK PHARMACOLOGICAL INHIBITOR SP600125 IS A PARTIAL AGONIST OF HUMAN ARYL HYDROCARBON RECEPTOR AND INDUCES CYP1A1 AND CYP1A2 GENES IN PRIMARY HUMAN HEPATOCYTES,” DRUG METABOLISM REVIEWS, vol. 40, pp. 147, 2008.
  
• R. Vrzal, P. Henklova, B. Papoukova, P. Bednar, P. Jancova, E. Anzenbacherova, J. Ulrichova, P. Maurel, P. Pavek, and Z. Dvorak, “AN INHIBITOR OF P38 MAP KINASE ACTIVATES ERK AND JNK MAP KINASES IN PRIMARY CULTURES OF HUMAN HEPATOCYTES,” DRUG METABOLISM REVIEWS, vol. 40, pp. 146, 2008.
  
• J. Drahokoupil, N. Ganev, M. Cernansky, P. Bohac, R. Ctvrtlik, and M. Stranyanek, “Stress and hardness in surface layers of shot-peened steels,” ZEITSCHRIFT FUR KRISTALLOGRAPHIE, pp. 89-96, 2008.
  
• J. Cerny, M. Kabelac, and P. Hobza, “Double-Helical -> Ladder Structural Transition in the B-DNA is Induced by a Loss of Dispersion Energy,” JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, vol. 130, iss. 47, pp. 16055-16059, 2008.
  
• J. Rezac, P. Jurecka, K. E. Riley, J. Cerny, H. Valdes, K. Pluhackova, K. Berka, T. Rezac, M. Pitonak, J. Vondrasek, and P. Hobza, “QUANTUM CHEMICAL BENCHMARK ENERGY AND GEOMETRY DATABASE FOR MOLECULAR CLUSTERS AND COMPLEX MOLECULAR SYSTEMS (www.begdb.com): A USERS MANUAL AND EXAMPLES,” COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS, vol. 73, iss. 10, pp. 1261-1270, 2008.
  
• V. Ranc, V. Havlicek, P. Bednar, and K. Lemr, “Nano-desorption electrospray and kinetic method in chiral analysis of drugs in whole human blood samples,” EUROPEAN JOURNAL OF MASS SPECTROMETRY, vol. 14, iss. 6, pp. 411-417, 2008.
  
• J. Pol, P. Novak, M. Volny, G. H. Kruppa, R. Kostiainen, K. Lemr, and V. Havlicek, “Application of silicon nanowires and indium tin oxide surfaces in desorption electrospray ionization,” EUROPEAN JOURNAL OF MASS SPECTROMETRY, vol. 14, iss. 6, Sp. Iss. SI, pp. 391-399, 2008.
  
• J. Frydrych, M. Mashlan, J. Pechousek, and D. Jancik, “Conversion Electron Detectors for (57)Fe Mossbauer Measurements,” in MOSSBAUER SPECTROSCOPY IN MATERIALS SCIENCE 2008, 2008, pp. 170-184.
  
• L. Machala, R. Zboril, V. K. Sharma, and Z. Homonnay, “Decomposition of Potassium Ferrate(VI) (K(2)FeO(4)) and Potassium Ferrate(III) (KFeO(2)): In-situ Mossbauer Spectroscopy Approach,” in MOSSBAUER SPECTROSCOPY IN MATERIALS SCIENCE 2008, 2008, pp. 114-121.
  
• O. Ryparova, J. Petr, M. Kowalska, J. Znaleziona, R. Knob, V. Maier, I. Frebort, and J. Sevcik, “Analysis of Microorganisms by Capillary Electrophoresis,” CHEMICKE LISTY, vol. 102, iss. 12, pp. 1121-1126, 2008.
  
• P. Lazar, B. Rashkova, J. Redinger, R. Podloucky, C. Mitterer, C. Scheu, and G. Dehm, “Interface structure of epitaxial (111) VN films on (111) MgO substrates,” THIN SOLID FILMS, vol. 517, iss. 3, pp. 1177-1181, 2008.
  
• W. Zierkiewicz, L. Komorowski, D. Michalska, J. Cerny, and P. Hobza, “The Amino Group in Adenine: MP2 and CCSD(T) Complete Basis Set Limit Calculations of the Planarization Barrier and DFT/B3LYP Study of the Anharmonic Frequencies of Adenine,” JOURNAL OF PHYSICAL CHEMISTRY B, vol. 112, iss. 51, pp. 16734-16740, 2008.
  
• M. Cada, P. Virostko, S. Kment, and Z. Hubicka, “Measurement of total energy flux density at a substrate during TiOx thin film deposition by using a plasma jet system,” VACUUM, vol. 83, iss. 4, Sp. Iss. SI, pp. 738-744, 2008.
  
• I. Palikova, J. Heinrich, P. Bednar, P. Marhol, V. Kren, L. Cvak, K. Valentova, F. Ruzicka, V. Hola, M. Kolar, V. Simanek, and J. Ulrichova, “Constituents and Antimicrobial Properties of Blue Honeysuckle: A Novel Source for Phenolic Antioxidants,” JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, vol. 56, iss. 24, pp. 11883-11889, 2008.
  
• L. Pellegatti, J. Zhang, B. Drahos, S. Villette, F. Suzenet, G. Guillaumet, S. Petoud, and E. Toth, “Pyridine-based lanthanide complexes: towards bimodal agents operating as near infrared luminescent and MRI reporters,” CHEMICAL COMMUNICATIONS, iss. 48, pp. 6591-6593, 2008.
  
• K. Pluhackova, S. Grimme, and P. Hobza, “On the Importance of Electron Correlation Effects for the Intramolecular Stacking Geometry of a Bis-Thiophene Derivative,” JOURNAL OF PHYSICAL CHEMISTRY A, vol. 112, iss. 48, pp. 12469-12474, 2008.
  
• J. Soubusta, L. Bartuskova, A. Cernoch, M. Dusek, and J. Fiurasek, “Experimental asymmetric phase-covariant quantum cloning of polarization qubits,” PHYSICAL REVIEW A, vol. 78, iss. 5, 2008.
  
• V. Vidova, K. Lemr, and V. Havlicek, “Recent Trends in Mass Spectrometry,” CHEMICKE LISTY, vol. 102, iss. 11, pp. 957-959, 2008.
  
• J. Fanfrlik, J. Brynda, J. Rezac, P. Hobza, and M. Lepsik, “Interpretation of Protein/Ligand Crystal Structure using QM/MM Calculations: Case of HIV-1 Protease/Metallacarborane Complex,” JOURNAL OF PHYSICAL CHEMISTRY B, vol. 112, iss. 47, pp. 15094-15102, 2008.
  
• J. Rezac and P. Hobza, “Benzene Dimer: Dynamic Structure and Thermodynamics Derived from On-the-Fly ab initio DFT-D Molecular Dynamic Simulations,” JOURNAL OF CHEMICAL THEORY AND COMPUTATION, vol. 4, iss. 11, pp. 1835-1840, 2008.
  
• M. Pitonak, P. Neogrady, J. Rezac, P. Jurecka, M. Urban, and P. Hobza, “Benzene Dimer: High-Level Wave Function and Density Functional Theory Calculations,” JOURNAL OF CHEMICAL THEORY AND COMPUTATION, vol. 4, iss. 11, pp. 1829-1834, 2008.
  
• T. Roessler, J. Gallo, M. Hrabovsky, D. Mandat, M. Pochmon, and V. Havranek, “Optical Non-contact In-vitro Measurement of Total Hip Arthroplasty Wear,” in 14TH NORDIC-BALTIC CONFERENCE ON BIOMEDICAL ENGINEERING AND MEDICAL PHYSICS, 2008, pp. 393-396.
  
• M. Pochmon, T. Roessler, J. Gallo, M. Hrabovsky, D. Mandat, and V. Havranek, “Potentialities of Wear Measurement in Total Knee Arthroplasty,” in 14TH NORDIC-BALTIC CONFERENCE ON BIOMEDICAL ENGINEERING AND MEDICAL PHYSICS, 2008, pp. 390-392.
  
• P. Lazar, R. Podloucky, E. Kozeschnik, and J. Redinger, “Density functional theory study of ternary V-Cr-N compounds,” PHYSICAL REVIEW B, vol. 78, iss. 13, 2008.
  
• J. Rezac, K. Berka, D. Horinek, P. Hobza, and J. Vondrasek, “THE STABILIZATION ENERGY OF THE GLU-LYS SALT BRIDGE IN THE PROTEIN/WATER ENVIRONMENT: CORRELATED QUANTUM CHEMICAL ab initio, DFT AND EMPIRICAL POTENTIAL STUDIES,” COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS, vol. 73, iss. 6-7, pp. 921-936, 2008.
  
• W. Wang and P. Hobza, “APPLICATION OF BERLIN’S THEOREM TO BOND-LENGTH CHANGES IN ISOLATED MOLECULES AND RED- AND BLUE-SHIFTING H-BONDED CLUSTERS,” COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS, vol. 73, iss. 6-7, pp. 862-872, 2008.
  
• L. Biedermannova, K. E. Riley, K. Berka, P. Hobza, and J. Vondrasek, “Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 42, pp. 6350-6359, 2008.
  
• P. Tucek and J. Marek, “THE VELOCITY OF THE RIVER FLOW,” in PROBASTAT `06, 2008, pp. 87-94.
  
• P. Hobza, “Non-Covalent Interactions with Participation of Hydrogen: Hydrogen Bond, Blue-Shifting Hydrogen Bond and Dihydrogen Bond,” CHEMICKE LISTY, vol. 102, iss. 10, pp. 884-888, 2008.
  
• M. Grepl, J. Roithova, P. Hradil, and K. Lemr, “Ionization and fragmentation of monochloro-isomers of 3-hydroxy-2-phenyl-4(1H)-quinolinone,” RAPID COMMUNICATIONS IN MASS SPECTROMETRY, vol. 22, iss. 18, pp. 2905-2914, 2008.
  
• A. B. Bourlinos, V. Georgakilas, R. Zboril, D. Jancik, M. A. Karakassides, A. Stassinopoulos, D. Anglos, and E. P. Giannelis, “Reaction of graphite fluoride with NaOH-KOH eutectic,” JOURNAL OF FLUORINE CHEMISTRY, vol. 129, iss. 8, pp. 720-724, 2008.
  
• P. Lazar and R. Podloucky, “Cleavage fracture of a crystal: Density functional theory calculations based on a model which includes structural relaxations,” PHYSICAL REVIEW B, vol. 78, iss. 10, 2008.
  
• P. Henklova, R. Vrzal, B. Papouskova, P. Bednar, P. Jancova, E. Anzenbacherova, J. Ulrichova, P. Maurel, P. Pavek, and Z. Dvorak, “SB203580, a pharmacological inhibitor of p38 MAP kinase transduction pathway activates ERK and JNK MAP kinases in primary cultures of human hepatocytes,” EUROPEAN JOURNAL OF PHARMACOLOGY, vol. 593, iss. 1-3, pp. 16-23, 2008.
  
• D. Nachtigallova, P. Hobza, and H. Ritze, “Electronic splitting in the excited states of DNA base homodimers and -trimers: an evaluation of short-range and Coulombic interactions,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 37, pp. 5689-5697, 2008.
  
• Z. Dvorak and P. Pavek, “Comment on “The role of redox-sensitive transcription factors NF-kappa B and AP-1 in the modulation of the Cyp1A1 gene by mercury, lead, and copper”,” FREE RADICAL BIOLOGY AND MEDICINE, vol. 45, iss. 6, pp. 939, 2008.
  
• M. Micuda, O. Haderka, and M. Jezek, “High-efficiency photon-number-resolving multichannel detector,” PHYSICAL REVIEW A, vol. 78, iss. 2, Part b, 2008.
  
• Z. Travnicek, J. Mikulik, M. Cajan, R. Zboril, and I. Popa, “Novel iron complexes bearing N6-substituted adenosine derivatives: Synthesis, magnetic, (57)Fe Mossbauer, DFT, and in vitro cytotoxicity studies,” BIOORGANIC & MEDICINAL CHEMISTRY, vol. 16, iss. 18, pp. 8719-8728, 2008.
  
• J. Perina and J. Krepelka, “Joint probability distributions of stimulated parametric down-conversion for controllable nonclassical fluctuations,” OPTICS COMMUNICATIONS, vol. 281, iss. 18, pp. 4705-4711, 2008.
  
• R. Ctvrtlik, M. Stranyanek, P. Bohac, V. Kulikovsky, and J. Suchanek, “Mechanical properties of a-C, SiC and Ti-C : H films,” INTERNATIONAL JOURNAL OF MATERIALS RESEARCH, vol. 99, iss. 8, pp. 871-875, 2008.
  
• P. Hamal, J. Ostransky, M. Dendis, R. Horvath, F. Ruzicka, V. Buchta, M. Vejsova, P. Sauer, P. Hejnar, and V. Raclavsky, “A case of endocarditis caused by the yeast Pichia fabianii with biofilm production and developed in vitro resistance to azoles in the course of antifungal treatment,” MEDICAL MYCOLOGY, vol. 46, iss. 6, pp. 601-605, 2008.
  
• B. Cvek and Z. Dvorak, “The value of proteasome inhibition in cancer,” DRUG DISCOVERY TODAY, vol. 13, iss. 15-16, pp. 716-722, 2008.
  
• P. Banas, L. Rulisek, V. Hanosova, D. Svozil, N. G. Walter, J. Sponer, and M. Otyepka, “General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility,” JOURNAL OF PHYSICAL CHEMISTRY B, vol. 112, iss. 35, pp. 11177-11187, 2008.
  
• L. Szucova, Z. Travnicek, I. Popa, and J. Marek, “Preparation and cis-to-trans transformation study of square-planar [Pt(L(n))2Cl(2)] complexes bearing cytokinins derived from 6-benzylaminopurine (L(n)) by view of NMR spectroscopy and X-ray crystallography,” POLYHEDRON, vol. 27, iss. 12, pp. 2710-2720, 2008.
  
• M. Pitonak, K. E. Riley, P. Neogrady, and P. Hobza, “Highly accurate CCSD(T) and DFT-SAPT stabilization energies of H-bonded and stacked structures of the uracil dimer,” CHEMPHYSCHEM, vol. 9, iss. 11, pp. 1636-1644, 2008.
  
• P. Virostko, Z. Hubicka, M. Cada, P. Adamek, S. Kment, M. Tichy, and L. Jastrabik, “Electrical probe diagnostics of the hollow cathode plasma jet system for deposition of TiOx thin films,” CONTRIBUTIONS TO PLASMA PHYSICS, vol. 48, iss. 5-7, pp. 527-533, 2008.
  
• P. Bachleda and Z. Dvorak, “Pharmacological inhibitors of JNK and ERK kinases SP600125 and U0126 are not appropriate tools for studies of drug metabolism because they activate aryl hydrocarbon receptor,” GENERAL PHYSIOLOGY AND BIOPHYSICS, vol. 27, iss. 2, pp. 143-145, 2008.
  
• E. Vrublova, J. Vostalova, R. Vecera, B. Klejdus, D. Stejskaj, P. Kosina, A. Zdarilova, A. Svobodova, V. Lichnovsky, P. Anzenbacher, Z. Dvorak, J. Vicar, V. Simanek, and J. Ulrichova, “The toxicity and pharmacokinetics of dihydrosanguinarine in rat: A pilot study,” FOOD AND CHEMICAL TOXICOLOGY, vol. 46, iss. 7, pp. 2546-2553, 2008.
  
• J. Soukupova, L. Kvitek, A. Panacek, T. Nevecna, and R. Zboril, “Comprehensive study on surfactant role on silver nanoparticles (NPs) prepared via modified Tollens process,” MATERIALS CHEMISTRY AND PHYSICS, vol. 111, iss. 1, pp. 77-81, 2008.
  
• J. Skopalik, P. Anzenbacher, and M. Otyepka, “Flexibility of human cytochromes P450: Molecular dynamics reveals differences between CYPs 3A4, 2C9, and 2A6, which correlate with their substrate preferences,” JOURNAL OF PHYSICAL CHEMISTRY B, vol. 112, iss. 27, pp. 8165-8173, 2008.
  
• I. Bartova, J. Koca, and M. Otyepka, “Regulatory phosphorylation of cyclin-dependent kinase 2: insights from molecular dynamics simulations,” JOURNAL OF MOLECULAR MODELING, vol. 14, iss. 8, pp. 761-768, 2008.
  
• P. Sklenovsky, P. Banas, and M. Otyepka, “Two C-terminal ankyrin repeats form the minimal stable unit of the ankyrin repeat protein p18(INK4c),” JOURNAL OF MOLECULAR MODELING, vol. 14, iss. 8, pp. 747-759, 2008.
  
• J. S. Murray, M. C. Concha, P. Lane, P. Hobza, and P. Politzer, “Blue shifts vs red shifts in sigma-hole bonding,” JOURNAL OF MOLECULAR MODELING, vol. 14, iss. 8, pp. 699-704, 2008.
  
• Z. Dvorak, R. Vrzal, P. Pavek, and J. Ulrichova, “An evidence for regulatory cross-talk between aryl hydrocarbon receptor and glucocorticoid receptor in HepG2 cells,” PHYSIOLOGICAL RESEARCH, vol. 57, iss. 3, pp. 427-435, 2008.
  
• M. Bondani, A. Allevi, G. Zambra, A. Andreoni, J. Perina, J. Krepelka, and J. Perina Jr., “Experimental demonstration of sub-shot-noise intensity correlations in an intense twin beam,” EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, vol. 160, pp. 33-41, 2008.
  
• H. Valdes, V. Spiwok, J. Rezac, D. Reha, A. G. Abo-Riziq, M. S. de Vries, and P. Hobza, “Potential-energy and free-energy surfaces of glycyl-phenylalanyl-alanine (GFA) tripeptide: Experiment and theory,” CHEMISTRY-A EUROPEAN JOURNAL, vol. 14, iss. 16, pp. 4886-4898, 2008.
  
• P. Pavlicek and O. Hybl, “White-light interferometry on rough surfaces – measurement uncertainty caused by surface roughness,” APPLIED OPTICS, vol. 47, iss. 16, pp. 2941-2949, 2008.
  
• L. Muller, P. Bartak, P. Bednar, I. Frysova, J. Sevcik, and K. Lemr, “Capillary electrophoresis-mass spectrometry – a fast and reliable tool for the monitoring of milk adulteration,” ELECTROPHORESIS, vol. 29, iss. 10, pp. 2088-2093, 2008.
  
• P. Dzubak, J. Sarek, P. Anzenbacher, V. Masek, P. Novak, V. Havlicek, M. Otyepka, D. Vydra, and M. Hajduch, “Betulinine JS8 induces apoptosis in tumor cells by mitochondrial disruption via specific non-covalent interactions with cytochrome c,” FEBS JOURNAL, vol. 275, iss. 1, pp. 447, 2008.
  
• L. Bendova-Biedermannova, P. Hobza, and J. Vondrasek, “Identifying stabilizing key residues in proteins using interresidue interaction energy matrix,” PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, vol. 72, iss. 1, pp. 402-413, 2008.
  
• J. Znaleziona, J. Petr, R. Knob, V. Maier, and J. Sevcik, “Dynamic coating agents in CE,” CHROMATOGRAPHIA, vol. 67, iss. S, pp. S5-S12, 2008.
  
• J. Petr, K. Vitkova, V. Ranc, J. Znaleziona, V. Maier, R. Knob, and J. Sevcik, “Determination of some phenolic acids in Majorana hortensis by capillary electrophoresis with online electrokinetic preconcentration,” JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, vol. 56, iss. 11, pp. 3940-3944, 2008.
  
• R. Vacha, L. Cwiklik, J. Rezac, P. Hobza, P. Jungwirth, K. Valsaraj, S. Bahr, and V. Kempter, “Adsorption of aromatic hydrocarbons and ozone at environmental aqueous surfaces,” JOURNAL OF PHYSICAL CHEMISTRY A, vol. 112, iss. 22, pp. 4942-4950, 2008.
  
• P. Hobza Jr., “The “Parmenides” and Plato’s theory of ideas,” FILOSOFICKY CASOPIS, vol. 56, iss. 1, pp. 45-64, 2008.
  
• V. Belessi, R. Zboril, J. Tucek, M. Mashlan, V. Tzitzios, and D. Petridis, “Ferrofluids from magnetic-chitosan hybrids,” CHEMISTRY OF MATERIALS, vol. 20, iss. 10, pp. 3298-3305, 2008.
  
• W. Wang and P. Hobza, “Theoretical study on the complexes of benzene with isoelectronic nitrogen-containing heterocycles,” CHEMPHYSCHEM, vol. 9, iss. 7, pp. 1003-1009, 2008.
  
• A. Cernoch, J. Soubusta, L. Bartuskova, M. Dusek, and J. Fiurasek, “Experimental realization of linear-optical partial SWAP gates,” PHYSICAL REVIEW LETTERS, vol. 100, iss. 18, 2008.
  
• M. P. Callahan, Z. Gengeliczki, N. Svadlenak, H. Valdes, P. Hobza, and M. S. de Vries, “Non-standard base pairing and stacked structures in methyl xanthine clusters,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 19, pp. 2819-2826, 2008.
  
• J. Cerny, X. Tong, P. Hobza, and K. Mueller-Dethlefs, “Competition between stacking and hydrogen bonding: theoretical study of the phenol center dot center dot center dot Ar cation and neutral complex and comparison to experiment,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 19, pp. 2780-2784, 2008.
  
• H. Valdes, K. Pluhackova, M. Pitonak, J. Rezac, and P. Hobza, “Benchmark database on isolated small peptides containing an aromatic side chain: comparison between wave function and density functional theory methods and empirical force field,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 19, pp. 2747-2757, 2008.
  
• J. Sponer, K. E. Riley, and P. Hobza, “Nature and magnitude of aromatic stacking of nucleic acid bases,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 19, pp. 2595-2610, 2008.
  
• P. Hobza, “Stacking interactions,” PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 10, iss. 19, pp. 2581-2583, 2008.
  
• Z. Travnicek, M. Matikova-Malarova, and J. Mikulik, “6-(2-Methoxybenzylamino)purine,” ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, vol. 64, iss. Part 5, pp. O823-U1592, 2008.
  
• W. Wang and P. Hobza, “Origin of the X-Hal (Hal = Cl, Br) bond-length change in the halogen-bonded complexes,” JOURNAL OF PHYSICAL CHEMISTRY A, vol. 112, iss. 17, pp. 4114-4119, 2008.
  
• J. Vanco, J. Marek, Z. Travnicek, E. Racanska, J. Muselik, and O. Svajlenova, “Synthesis, structural characterization, antiradical and antidiabetic activities of copper(II) and zinc(II) Schiff base complexes derived from salicylaldehyde and beta-alanine,” JOURNAL OF INORGANIC BIOCHEMISTRY, vol. 102, iss. 4, pp. 595-605, 2008.
  
• P. Henklova, R. Vrzal, J. Ulrichova, and Z. Dvorak, “Role of mitogen-activated protein kinases in aryl hydrocarbon receptor signaling,” CHEMICO-BIOLOGICAL INTERACTIONS, vol. 172, iss. 2, pp. 93-104, 2008.
  
• P. Virostko, Z. Hubicka, M. Cada, P. Adamek, S. Kment, M. Tichy, and L. Jastrabik, “Measuring the ion flux to the deposition substrate in the hollow cathode plasma jet,” in PLASMA 2007, 2008, pp. 427-430.
  
• R. A. Yngard, V. K. Sharma, J. Filip, and R. Zboril, “Ferrate(VI) oxidation of weak-acid dissociable cyanides,” ENVIRONMENTAL SCIENCE & TECHNOLOGY, vol. 42, iss. 8, pp. 3005-3010, 2008.
  
• L. Kvitek, A. Panacek, J. Soukupova, M. Kolar, R. Vecerova, R. Prucek, M. Holecova, and R. Zboril, “Effect of surfactants and polymers on stability and antibacterial activity of silver nanoparticles (NPs),” JOURNAL OF PHYSICAL CHEMISTRY C, vol. 112, iss. 15, pp. 5825-5834, 2008.
  
• J. Perina and J. Krepelka, “Joint distributions of multimode stimulated parametric down-conversion and controllable nonclassical effects,” JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS, vol. 41, iss. 8, 2008.
  
• S. Vrana and P. Sulovsky, “Polymetamorphic sapphirine rocks of the Irumide age in Lower Luangwa Valley, Zambia,” NEUES JAHRBUCH FUR MINERALOGIE-ABHANDLUNGEN, vol. 184, iss. 3, pp. 315-328, 2008.
  
• H. Valdes, V. Klusak, M. Pitonak, O. Exner, I. Stary, P. Hobza, and L. Rulisek, “Evaluation of the intramolecular basis set superposition error in the calculations of larger molecules: [n]Helicenes and Phe-Gly-Phe tripeptide,” JOURNAL OF COMPUTATIONAL CHEMISTRY, vol. 29, iss. 6, pp. 861-870, 2008.
  
• J. Filip, E. Dachs, J. Tucek, M. Novak, and P. Bezdicka, “Low-temperature calorimetric and magnetic data for natural end-members of the axinite group,” AMERICAN MINERALOGIST, vol. 93, iss. 4, pp. 548-557, 2008.
  
• I. Potocnak, M. Spilovsky, and Z. Travnicek, “Low-dimensional compounds containing cyano groups. XVI. (Dicyanamido-kappa N-1)bis(1,10-phenanthroline-kappa N-2,N `)copper(II) tetrafluoridoborate,” ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, vol. 64, iss. Part 4, pp. M161-M163, 2008.
  
• J. Styskala, P. Cankar, M. Soural, P. Bednar, and K. Lemr, “Synthesis of some deuterated dialkylaminoethyls as possible standards for the mass spectrometric monitoring of chemical warfare agents,” JOURNAL OF LABELLED COMPOUNDS & RADIOPHARMACEUTICALS, vol. 51, iss. 1-2, pp. 19-22, 2008.
  
• C. Barinka, K. Hlouchova, M. Rovenska, P. Majer, M. Dauter, N. Hin, Y. Ko, T. Tsukamoto, B. S. Slusher, J. Konvalinka, and J. Lubkowski, “Structural basis of interactions between human glutamate carboxypeptidase II and its substrate analogs,” JOURNAL OF MOLECULAR BIOLOGY, vol. 376, iss. 5, pp. 1438-1450, 2008.
  
• L. Bartuskova, A. Cernoch, J. Soubusta, and M. Dusek, “Programmable discriminator of coherent states: Experimental realization,” PHYSICAL REVIEW A, vol. 77, iss. 3, 2008.
  
• Z. Travnicek, M. Matikova-Malarova, and K. Stepankova, “6-(2-chlorobenzylamino)purinium tetra-chlorido(dimethyl sulfoxide-kappa O)(nitrosyl-kappa N)ruthenate(III) monohydrate,” ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, vol. 64, iss. Part 4, pp. M545-U305, 2008.
  
• P. Anzenbacher, E. Anzenbacherova, R. Lange, J. Skopalik, and M. Otyepka, “Active sites of cytochromes P450: What are they like?,” ACTA CHIMICA SLOVENICA, vol. 55, iss. 1, pp. 63-66, 2008.
  
• J. Cerny, X. Tong, P. Hobza, and K. Mueller-Dethlefs, “State of the art theoretical study and comparison to experiment for the phenol center dot center dot center dot argon complex,” JOURNAL OF CHEMICAL PHYSICS, vol. 128, iss. 11, 2008.
  
• P. Lazar, J. Redinger, J. Strobl, R. Podloucky, B. Rashkova, G. Dehm, G. Kothleitner, S. Sturm, K. Kutschej, C. Mitterer, and C. Scheu, “N-K electron energy-loss near-edge structures for TiN/VN layers: an ab initio and experimental study,” ANALYTICAL AND BIOANALYTICAL CHEMISTRY, vol. 390, iss. 6, pp. 1447-1453, 2008.
  
• P. Pavek and Z. Dvorak, “Xenobiotic-induced transcriptional regulation of xenobiotic metabolizing enzymes of the cytochrome P450 superfamily in human extrahepatic tissues,” CURRENT DRUG METABOLISM, vol. 9, iss. 2, pp. 129-143, 2008.
  
• S. Kment, P. Kluson, H. Bartkova, J. Krysa, O. Churpita, M. Cada, P. Virostko, M. Kohout, and Z. Hubicka, “Advanced methods for titanium (IV) oxide thin functional coatings,” SURFACE & COATINGS TECHNOLOGY, vol. 202, iss. 11, pp. 2379-2383, 2008.
  
• J. Rezac and P. Hobza, “Correlation between the thermodynamic stability of DNA duplexes and the interaction and solvation energies of DNA building blocks,” COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS, vol. 73, iss. 2, pp. 161-174, 2008.
  
• K. E. Riley and P. Hobza, “A DFT-D investigation of the mechanisms for activation of the wild-type and S810L mutated mineralocorticoid receptor by steroid hormones,” JOURNAL OF PHYSICAL CHEMISTRY B, vol. 112, iss. 10, pp. 3157-3163, 2008.
  
• J. Marek and Z. Travnicek, “(mu-5-Carboxybenzene-1,3-dicarboxylato-kappa O-2(1): O-3)bis[bis(2,2 `-bipyridine-kappa N-2,N `)-copper(II)] 5-carboxybenzene-1,3-dicarboxylate 2,2 `-bipyridine solvate tridecahydrate,” ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, vol. 64, iss. Part 2, pp. M384-U1018, 2008.
  
• Z. Travnicek, J. Marek, J. Vanco, and O. Svajlenova, “Aqua(4-methylquinoline-kappa N)[N-(2-oxidobenzylidene)glycinato-kappa O-3,N,O `]copper(II) hemihydrate,” ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, vol. 64, iss. Part 2, pp. M282-U199, 2008.
  
• R. Vrzal, M. Daujat-Chavanieu, J. Pascussi, J. Ulrichova, P. Maurel, and Z. Dvorak, “Microtubules-interfering agents restrict aryl hydrocarbon receptor-mediated CYP1A2 induction in primary cultures of human hepatocytes via c-jun-N-terminal kinase and glucocorticoid receptor,” EUROPEAN JOURNAL OF PHARMACOLOGY, vol. 581, iss. 3, pp. 244-254, 2008.
  
• Z. Takats, V. Kobliha, K. Sevcik, P. Novak, G. Kruppa, K. Lemr, and V. Havlicek, “Characterization of DESI-FTICR mass spectrometry – from ECD to accurate mass tissue analysis,” JOURNAL OF MASS SPECTROMETRY, vol. 43, iss. 2, pp. 196-203, 2008.
  
• D. Nachtigallova, P. Hobza, and V. Spirko, “Assigning the NH stretches of the Guanine tautomers using adiabatic separation: CCSD(T) benchmark calculations,” JOURNAL OF PHYSICAL CHEMISTRY A, vol. 112, iss. 9, pp. 1854-1856, 2008.
  
• M. Kajnakova, A. Orendacova, M. Orendac, A. Feher, M. Mal’arova, and Z. Travnicek, “Magneto-structural correlations in Cu(en)(2)SO4 – a new magnet with two-dimensional triangular arrangement of Cu(II) ions,” ACTA PHYSICA POLONICA A, vol. 113, iss. 1, pp. 507-510, 2008.
  
• Z. Travnicek, R. Pastorek, and V. Slovak, “Novel octahedral nickel(II) dithiocarbamates with bi- or tetradentate N-donor ligands: X-ray structures of [Ni(Bzppzdtc)(phen)(2)]ClO(4)center dot CHCl(3) and [Ni(Bz(2)dtC)(2)(cyclam)],” POLYHEDRON, vol. 27, iss. 1, pp. 411-419, 2008.
  
• K. E. Riley and P. Hobza, “Investigations into the nature of halogen bonding including symmetry adapted perturbation theory analyses,” JOURNAL OF CHEMICAL THEORY AND COMPUTATION, vol. 4, iss. 2, pp. 232-242, 2008.
  
• J. Perina Jr., “Quantum properties of counterpropagating two-photon states generated in a planar waveguide,” PHYSICAL REVIEW A, vol. 77, iss. 1, 2008.
  
• Z. Dvorak, R. Vrzal, P. Henklova, P. Jancova, E. Anzenbacheroua, P. Maurel, L. Svecova, P. Pavek, J. Ehrmann, R. Havlik, P. Bednar, K. Lemr, and J. Ulrichova, “JNK inhibitor SP600125 is a partial agonist of human aryl hydrocarbon receptor and induces CYP1A1 and CYP1A2 genes in primary human hepatocytes,” BIOCHEMICAL PHARMACOLOGY, vol. 75, iss. 2, pp. 580-588, 2008.
  
• M. Rovenska, K. Hlouchova, P. Sacha, P. Mlochova, V. Horak, J. Zamecnik, C. Barinka, and J. Konvalinka, “Tissue expression and enzymologic characterization of human prostate specific membrane antigen and its rat and pig orthologs,” PROSTATE, vol. 68, iss. 2, pp. 171-182, 2008.
  
• M. Otyepka, P. Banas, A. Magistrato, P. Carloni, and J. Damborsky, “Second step of hydrolytic dehalogenation in haloalkane dehalogenase investigated by QM/MM methods,” PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, vol. 70, iss. 3, pp. 707-717, 2008.
  
• K. Volna, M. Holcapek, L. Kolarova, K. Lemr, J. Caslavsky, P. Kacer, J. Poustka, and M. Hubalek, “Comparison of negative ion electrospray mass spectra measured by seven tandem mass analyzers towards library formation,” RAPID COMMUNICATIONS IN MASS SPECTROMETRY, vol. 22, iss. 2, pp. 101-108, 2008.
  
• V. Kulikovsky, V. Vorlicek, P. Bohac, M. Stranyanek, R. Ctvrtlik, A. Kurdyumov, and L. Jastrabik, “Hardness and elastic modulus of amorphous and nanocrystalline SiC and Si films,” SURFACE & COATINGS TECHNOLOGY, vol. 202, iss. 9, pp. 1738-1745, 2008.
  
• L. Svecova, R. Vrzal, L. Burysek, E. Anzenbacherova, L. Cerveny, J. Grim, F. Trejtnar, J. Kunes, M. Pour, F. Staud, P. Anzenbacher, Z. Dvorak, and P. Pavek, “Azole antimycotics differentially affect rifampicin-induced pregnane x receptor-mediated CYP3A4 gene expression,” DRUG METABOLISM AND DISPOSITION, vol. 36, iss. 2, pp. 339-348, 2008.
  
• T. Onica, K. Nichols, M. Larin, L. Ng, A. Maslen, Z. Dvorak, J. Pascussi, M. Vilarem, P. Maurel, and G. M. Kirby, “Dexamethasone-mediated up-regulation of human CYP2A6 involves the glucocorticoid receptor and increased binding of hepatic nuclear factor 4 alpha to the proximal promoter,” MOLECULAR PHARMACOLOGY, vol. 73, iss. 2, pp. 451-460, 2008.
  
• J. Vrba, Z. Dvorak, J. Ulrichova, and M. Modriansky, “Conventional protein kinase C isoenzymes undergo dephosphorylation in neutrophil-like HL-60 cells treated by chelerythrine or sanguinarine,” CELL BIOLOGY AND TOXICOLOGY, vol. 24, iss. 1, pp. 39-53, 2008.
  
• I. Bartova, J. Koca, and M. Otyepka, “Functional flexibility of human cyclin-dependent kinase-2 and its evolutionary conservation,” PROTEIN SCIENCE, vol. 17, iss. 1, pp. 22-33, 2008.